Computers And Life Sciences
This is a blog about stuff, problems and practical solutions, I run into while doing my PhD research in [Bio|Chemo]informatics and about everything else in interdisciplinary research using Computers applied to Life Sciences
Thursday, July 7, 2016
Sunday, July 3, 2016
PCA and Multivariate Analysis for Chemical Signals
http://pubs.rsc.org/en/content/articlehtml/2014/ay/c3ay41907j
http://depts.washington.edu/cpac/Activities/Meetings/documents/DearingFundamentalsofChemometrics.pdf
http://depts.washington.edu/cpac/Activities/Meetings/documents/DearingFundamentalsofChemometrics.pdf
Friday, June 24, 2016
PCA for dummies
PCA
http://cmp.felk.cvut.cz/~hlavac/TeachPresEn/11ImageProc/15PCA.pdf
http://stats.stackexchange.com/questions/2691/making-sense-of-principal-component-analysis-eigenvectors-eigenvalues
PCA for Images
http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1679-45082012000200004
Mulivariate Tools
https://www.gitbook.com/book/svkucheryavski/mdatoolsm/details
PLS
http://www.eupigclass.net/Work1_8.htm
Multivariate Techniques
http://folk.uio.no/ohammer/past/multivar.html
http://cmp.felk.cvut.cz/~hlavac/TeachPresEn/11ImageProc/15PCA.pdf
http://stats.stackexchange.com/questions/2691/making-sense-of-principal-component-analysis-eigenvectors-eigenvalues
PCA for Images
http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1679-45082012000200004
Mulivariate Tools
https://www.gitbook.com/book/svkucheryavski/mdatoolsm/details
PLS
http://www.eupigclass.net/Work1_8.htm
Multivariate Techniques
http://folk.uio.no/ohammer/past/multivar.html
Tuesday, June 21, 2016
Metabolomics and Proteomics Sample Datasets
From MAVEN:
http://genomics-pubs.princeton.edu/mzroll/index.php?show=download
From Sashimi Repository
http://sashimi.sourceforge.net/repository.html
From Peptide Atlas
http://www.peptideatlas.org/repository/
Tuesday, May 10, 2016
Matlab 2013a not workin on OSX 10.11 EL Capitan
Apparently there is a JAVA language back-compatibility, so install the JAVA 6 (version 1.6) and install the Mathworks bugfix. There are patches for all versions from R2011a through R2014a .
The download link is here:
http://www.mathworks.com/support/bugreports/1098655
The download link is here:
http://www.mathworks.com/support/bugreports/1098655
Wednesday, April 9, 2014
Working with files
A simple way to convert .doc files into .txt ( ) files is textutils
http://osxdaily.com/2014/02/20/batch-convert-docx-to-txt-mac/
http://osxdaily.com/2014/02/20/batch-convert-docx-to-txt-mac/
Tuesday, November 26, 2013
Just Because computers sucks at times
Download an image of RescueSystemCD
Burn it with Infra Burn. (Here is how)
And get your data and fix that computer ASAP.
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